Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.5■□□□□ 0.71
MMP3P08254 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
MMP3P08254 PMS2P2-201ENST00000425039 1128 ntBASIC19.5■□□□□ 0.71
MMP3P08254 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.5■□□□□ 0.71
MMP3P08254 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.5■□□□□ 0.71
MMP3P08254 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.5■□□□□ 0.71
MMP3P08254 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.5■□□□□ 0.71
MMP3P08254 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.5■□□□□ 0.71
MMP3P08254 AC010654.1-201ENST00000615722 808 ntBASIC19.5■□□□□ 0.71
MMP3P08254 AL513190.1-201ENST00000621254 727 ntBASIC19.5■□□□□ 0.71
MMP3P08254 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
MMP3P08254 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.5■□□□□ 0.71
MMP3P08254 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MMP3P08254 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.49■□□□□ 0.71
MMP3P08254 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.49■□□□□ 0.71
MMP3P08254 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 MYCLP1-201ENST00000372451 1075 ntBASIC19.49■□□□□ 0.71
MMP3P08254 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 AP006288.1-201ENST00000446065 395 ntBASIC19.49■□□□□ 0.71
MMP3P08254 AC005829.1-201ENST00000570002 483 ntBASIC19.49■□□□□ 0.71
MMP3P08254 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
MMP3P08254 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
MMP3P08254 KRT18P55-202ENST00000578578 1546 ntBASIC19.49■□□□□ 0.71
MMP3P08254 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.49■□□□□ 0.71
MMP3P08254 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
MMP3P08254 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.49■□□□□ 0.71
MMP3P08254 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MMP3P08254 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
MMP3P08254 AP002414.1-201ENST00000391405 1147 ntBASIC19.48■□□□□ 0.71
MMP3P08254 MRPL20P1-201ENST00000400819 433 ntBASIC19.48■□□□□ 0.71
MMP3P08254 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.48■□□□□ 0.71
MMP3P08254 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 YBX1P5-201ENST00000509441 847 ntBASIC19.48■□□□□ 0.71
MMP3P08254 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.48■□□□□ 0.71
MMP3P08254 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.48■□□□□ 0.71
MMP3P08254 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MMP3P08254 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
MMP3P08254 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
MMP3P08254 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.47■□□□□ 0.71
MMP3P08254 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
MMP3P08254 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.47■□□□□ 0.71
MMP3P08254 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
MMP3P08254 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.47■□□□□ 0.71
MMP3P08254 AC090164.3-201ENST00000610780 2143 ntBASIC19.47■□□□□ 0.71
MMP3P08254 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
MMP3P08254 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MMP3P08254 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MMP3P08254 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms