Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL1A1P02452 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.2■□□□□ 0.98
COL1A1P02452 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.2■□□□□ 0.98
COL1A1P02452 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.2■□□□□ 0.98
COL1A1P02452 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.19■□□□□ 0.98
COL1A1P02452 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC21.19■□□□□ 0.98
COL1A1P02452 AC211486.1-202ENST00000416371 468 ntBASIC21.19■□□□□ 0.98
COL1A1P02452 AC211476.1-201ENST00000503899 468 ntBASIC21.19■□□□□ 0.98
COL1A1P02452 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL1A1P02452 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.18■□□□□ 0.98
COL1A1P02452 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
COL1A1P02452 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL1A1P02452 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.18■□□□□ 0.98
COL1A1P02452 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.18■□□□□ 0.98
COL1A1P02452 AL805961.1-202ENST00000641562 540 ntBASIC21.18■□□□□ 0.98
COL1A1P02452 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.18■□□□□ 0.98
COL1A1P02452 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL1A1P02452 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 AC023274.1-201ENST00000418278 595 ntBASIC21.17■□□□□ 0.98
COL1A1P02452 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 SIGLEC30P-201ENST00000455569 941 ntBASIC21.17■□□□□ 0.98
COL1A1P02452 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC21.17■□□□□ 0.98
COL1A1P02452 RPS15P9-201ENST00000494093 319 ntBASIC21.17■□□□□ 0.98
COL1A1P02452 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.17■□□□□ 0.98
COL1A1P02452 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 AL353135.1-201ENST00000606729 504 ntBASIC21.17■□□□□ 0.98
COL1A1P02452 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.17■□□□□ 0.98
COL1A1P02452 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
COL1A1P02452 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
COL1A1P02452 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL1A1P02452 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL1A1P02452 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL1A1P02452 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC21.16■□□□□ 0.98
COL1A1P02452 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL1A1P02452 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.16■□□□□ 0.98
COL1A1P02452 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL1A1P02452 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL1A1P02452 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL1A1P02452 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.16■□□□□ 0.98
COL1A1P02452 AC135050.7-201ENST00000624508 2218 ntBASIC21.16■□□□□ 0.98
COL1A1P02452 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.16■□□□□ 0.98
COL1A1P02452 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL1A1P02452 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.16■□□□□ 0.98
COL1A1P02452 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms