Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
CNOT4O95628 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.75■□□□□ 0.11
CNOT4O95628 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.75■□□□□ 0.11
CNOT4O95628 AC091607.1-201ENST00000490318 1060 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 KRT18P31-201ENST00000506277 1292 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 FOSL1P1-201ENST00000511041 816 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.75■□□□□ 0.11
CNOT4O95628 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.75■□□□□ 0.11
CNOT4O95628 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 BNIP3P18-201ENST00000593976 575 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 AC023511.2-201ENST00000618803 211 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 AC009113.1-201ENST00000570267 2443 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 FER1L4-210ENST00000615531 5998 ntBASIC15.75■□□□□ 0.11
CNOT4O95628 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
CNOT4O95628 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.75■□□□□ 0.11
CNOT4O95628 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CNOT4O95628 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 AC018470.1-201ENST00000624790 3129 ntBASIC15.74■□□□□ 0.11
CNOT4O95628 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.74■□□□□ 0.11
CNOT4O95628 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.74■□□□□ 0.11
CNOT4O95628 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.74■□□□□ 0.11
CNOT4O95628 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.74■□□□□ 0.11
CNOT4O95628 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.74■□□□□ 0.11
CNOT4O95628 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 AC006538.3-201ENST00000612495 578 ntBASIC15.74■□□□□ 0.11
CNOT4O95628 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.74■□□□□ 0.11
CNOT4O95628 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CNOT4O95628 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CNOT4O95628 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CNOT4O95628 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.73■□□□□ 0.11
CNOT4O95628 FLJ13224-201ENST00000313737 1514 ntBASIC15.73■□□□□ 0.11
CNOT4O95628 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.73■□□□□ 0.11
CNOT4O95628 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 TP73-AS1-210ENST00000637775 1455 ntBASIC15.73■□□□□ 0.11
CNOT4O95628 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CNOT4O95628 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.73■□□□□ 0.11
CNOT4O95628 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms