Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 AC021087.4-201ENST00000563761 564 ntBASIC21.1■□□□□ 0.97
MBD4O95243 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.1■□□□□ 0.97
MBD4O95243 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.1■□□□□ 0.97
MBD4O95243 NKAPP1-205ENST00000585790 367 ntBASIC21.1■□□□□ 0.97
MBD4O95243 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 AC079776.2-201ENST00000641154 1609 ntBASIC21.1■□□□□ 0.97
MBD4O95243 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
MBD4O95243 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.1■□□□□ 0.97
MBD4O95243 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.1■□□□□ 0.97
MBD4O95243 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MBD4O95243 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.1■□□□□ 0.97
MBD4O95243 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.09■□□□□ 0.97
MBD4O95243 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.09■□□□□ 0.97
MBD4O95243 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
MBD4O95243 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.09■□□□□ 0.97
MBD4O95243 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
MBD4O95243 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
MBD4O95243 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.09■□□□□ 0.97
MBD4O95243 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.09■□□□□ 0.97
MBD4O95243 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.09■□□□□ 0.97
MBD4O95243 AC018712.1-201ENST00000455767 687 ntBASIC21.09■□□□□ 0.97
MBD4O95243 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
MBD4O95243 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.09■□□□□ 0.97
MBD4O95243 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.09■□□□□ 0.97
MBD4O95243 AC004817.3-201ENST00000602957 2129 ntBASIC21.09■□□□□ 0.97
MBD4O95243 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.09■□□□□ 0.97
MBD4O95243 AL139288.1-201ENST00000623748 933 ntBASIC21.09■□□□□ 0.97
MBD4O95243 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
MBD4O95243 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
MBD4O95243 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
MBD4O95243 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MBD4O95243 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
MBD4O95243 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
MBD4O95243 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 SPDYE21P-201ENST00000413323 827 ntBASIC21.08■□□□□ 0.97
MBD4O95243 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
MBD4O95243 AF186996.4-201ENST00000467186 377 ntBASIC21.08■□□□□ 0.97
MBD4O95243 RNA5SP419-201ENST00000515908 135 ntBASIC21.08■□□□□ 0.97
MBD4O95243 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.08■□□□□ 0.97
MBD4O95243 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.08■□□□□ 0.97
MBD4O95243 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
MBD4O95243 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
MBD4O95243 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
MBD4O95243 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
MBD4O95243 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
MBD4O95243 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MBD4O95243 HLA-A-201ENST00000376802 1334 ntBASIC21.07■□□□□ 0.96
MBD4O95243 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
MBD4O95243 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 SLC25A6P5-201ENST00000435663 894 ntBASIC21.07■□□□□ 0.96
MBD4O95243 HNRNPDP1-201ENST00000439535 754 ntBASIC21.07■□□□□ 0.96
MBD4O95243 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 AC073648.2-201ENST00000510116 352 ntBASIC21.07■□□□□ 0.96
MBD4O95243 AL662844.1-201ENST00000546340 181 ntBASIC21.07■□□□□ 0.96
MBD4O95243 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MBD4O95243 AL773604.1-201ENST00000617417 272 ntBASIC21.07■□□□□ 0.96
MBD4O95243 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.07■□□□□ 0.96
MBD4O95243 AC073592.4-201ENST00000623827 446 ntBASIC21.07■□□□□ 0.96
MBD4O95243 AC018470.1-201ENST00000624790 3129 ntBASIC21.07■□□□□ 0.96
MBD4O95243 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms