Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA3O43365 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXA3O43365 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA3O43365 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.23□□□□□ -0.13
HOXA3O43365 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXA3O43365 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA3O43365 AC008735.5-201ENST00000623544 497 ntBASIC14.23□□□□□ -0.13
HOXA3O43365 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA3O43365 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXA3O43365 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXA3O43365 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 AC010460.3-201ENST00000511359 1579 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HOXA3O43365 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 AC022898.2-201ENST00000616822 1312 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HOXA3O43365 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 MED15P5-201ENST00000423150 992 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 BX005266.1-201ENST00000473402 457 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 CD63-204ENST00000546939 779 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXA3O43365 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.22□□□□□ -0.13
HOXA3O43365 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.22□□□□□ -0.13
HOXA3O43365 AC105339.3-201ENST00000560043 636 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 AC145285.3-201ENST00000564603 959 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.22□□□□□ -0.13
HOXA3O43365 AC027601.4-201ENST00000611259 610 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 AC107918.4-202ENST00000641623 219 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
HOXA3O43365 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HOXA3O43365 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 AC093010.1-201ENST00000473625 1624 ntBASIC14.22□□□□□ -0.13
HOXA3O43365 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXA3O43365 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
HOXA3O43365 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
HOXA3O43365 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
HOXA3O43365 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXA3O43365 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.21□□□□□ -0.13
HOXA3O43365 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 Z83851.2-201ENST00000609564 659 ntBASIC14.21□□□□□ -0.13
HOXA3O43365 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.21□□□□□ -0.13
HOXA3O43365 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HOXA3O43365 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HOXA3O43365 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA3O43365 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA3O43365 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HOXA3O43365 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA3O43365 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA3O43365 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HOXA3O43365 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA3O43365 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA3O43365 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms