Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CCDC188H7C350 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC188H7C350 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC188H7C350 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC188H7C350 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC188H7C350 PCDHA14-201ENST00000506751 2298 ntBASIC18.42■□□□□ 0.54
CCDC188H7C350 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC188H7C350 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CCDC188H7C350 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC188H7C350 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC188H7C350 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC188H7C350 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 LINC01311-201ENST00000565162 1445 ntBASIC18.41■□□□□ 0.54
CCDC188H7C350 PCDHB19P-201ENST00000570871 2371 ntBASIC18.41■□□□□ 0.54
CCDC188H7C350 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC188H7C350 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC188H7C350 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC188H7C350 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC188H7C350 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 AC142381.4-202ENST00000563973 229 ntBASIC18.41■□□□□ 0.54
CCDC188H7C350 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC188H7C350 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC188H7C350 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC188H7C350 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC188H7C350 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC188H7C350 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 AC018695.7-201ENST00000624587 2492 ntBASIC18.4■□□□□ 0.54
CCDC188H7C350 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC188H7C350 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC188H7C350 AC009947.2-201ENST00000444014 672 ntBASIC18.4■□□□□ 0.54
CCDC188H7C350 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC188H7C350 FAM201B-201ENST00000458407 597 ntBASIC18.4■□□□□ 0.54
CCDC188H7C350 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC188H7C350 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC188H7C350 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC188H7C350 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC188H7C350 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC188H7C350 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC188H7C350 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC188H7C350 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC188H7C350 KRT89P-201ENST00000620027 1478 ntBASIC18.39■□□□□ 0.54
CCDC188H7C350 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC188H7C350 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC188H7C350 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC188H7C350 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CCDC188H7C350 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC188H7C350 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC188H7C350 TSPY14P-201ENST00000303979 915 ntBASIC18.39■□□□□ 0.53
CCDC188H7C350 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC188H7C350 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC188H7C350 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC188H7C350 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms