Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 RN7SL471P-201ENST00000580476 299 ntBASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 FLJ38576-201ENST00000623820 2459 ntBASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.68■□□□□ 0.42
USH1CQ9Y6N9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 MESTP1-201ENST00000404287 994 ntBASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
USH1CQ9Y6N9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.66■□□□□ 0.42
USH1CQ9Y6N9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms