Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AL662844.1-201ENST00000546340 181 ntBASIC18.2■□□□□ 0.5
SKA1Q96BD8 AL160237.2-201ENST00000556165 472 ntBASIC18.2■□□□□ 0.5
SKA1Q96BD8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC011840.4-201ENST00000578471 627 ntBASIC18.2■□□□□ 0.5
SKA1Q96BD8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC099336.1-202ENST00000602961 463 ntBASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC138894.3-201ENST00000603787 634 ntBASIC18.2■□□□□ 0.5
SKA1Q96BD8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.2■□□□□ 0.5
SKA1Q96BD8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SKA1Q96BD8 AC084018.2-201ENST00000613093 2607 ntBASIC18.19■□□□□ 0.5
SKA1Q96BD8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 FLJ13224-201ENST00000313737 1514 ntBASIC18.19■□□□□ 0.5
SKA1Q96BD8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 AL592071.1-201ENST00000611956 408 ntBASIC18.19■□□□□ 0.5
SKA1Q96BD8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SKA1Q96BD8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.19■□□□□ 0.5
SKA1Q96BD8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 PP12613-201ENST00000424958 2230 ntBASIC18.18■□□□□ 0.5
SKA1Q96BD8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 LINC00167-201ENST00000530583 1419 ntBASIC18.18■□□□□ 0.5
SKA1Q96BD8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.18■□□□□ 0.5
SKA1Q96BD8 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SKA1Q96BD8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms