Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 TMPOP1-202ENST00000424642 1267 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 DGCR10-201ENST00000609839 495 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 MIR6786-201ENST00000616843 113 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 AC092865.7-201ENST00000641832 219 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 LINC01568-207ENST00000641790 1380 ntBASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ZNF540Q8NDQ6 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
ZNF540Q8NDQ6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.46■□□□□ 0.22
ZNF540Q8NDQ6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
ZNF540Q8NDQ6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
ZNF540Q8NDQ6 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AC093010.1-201ENST00000473625 1624 ntBASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 RCN1P1-201ENST00000400413 996 ntBASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AC133963.1-201ENST00000504166 1679 ntBASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 PCDH8P1-201ENST00000428983 2773 ntBASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ZNF540Q8NDQ6 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms