Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
VPS8Q8N3P4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC27.57■■■□□ 2
VPS8Q8N3P4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
VPS8Q8N3P4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC27.57■■■□□ 2
VPS8Q8N3P4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
VPS8Q8N3P4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC27.57■■■□□ 2
VPS8Q8N3P4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC27.57■■■□□ 2
VPS8Q8N3P4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC27.57■■■□□ 2
VPS8Q8N3P4 AC117500.6-201ENST00000624871 588 ntBASIC27.57■■■□□ 2
VPS8Q8N3P4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC27.57■■■□□ 2
VPS8Q8N3P4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC27.56■■■□□ 2
VPS8Q8N3P4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC27.56■■■□□ 2
VPS8Q8N3P4 AC046185.3-201ENST00000623228 1824 ntBASIC27.56■■■□□ 2
VPS8Q8N3P4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC27.56■■■□□ 2
VPS8Q8N3P4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC27.56■■■□□ 2
VPS8Q8N3P4 AC098831.1-202ENST00000438821 336 ntBASIC27.56■■■□□ 2
VPS8Q8N3P4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC27.56■■■□□ 2
VPS8Q8N3P4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC27.56■■■□□ 2
VPS8Q8N3P4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC27.56■■■□□ 2
VPS8Q8N3P4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
VPS8Q8N3P4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC27.56■■■□□ 2
VPS8Q8N3P4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC27.56■■■□□ 2
VPS8Q8N3P4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC27.56■■■□□ 2
VPS8Q8N3P4 LYSMD4-203ENST00000378904 2122 ntBASIC27.56■■■□□ 2
VPS8Q8N3P4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
VPS8Q8N3P4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC27.56■■■□□ 2
VPS8Q8N3P4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC27.55■■■□□ 2
VPS8Q8N3P4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC27.55■■■□□ 2
VPS8Q8N3P4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC27.55■■■□□ 2
VPS8Q8N3P4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC27.55■■■□□ 2
VPS8Q8N3P4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC27.55■■■□□ 2
VPS8Q8N3P4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 SIGLEC30P-201ENST00000455569 941 ntBASIC27.55■■■□□ 2
VPS8Q8N3P4 AC004706.3-202ENST00000621574 984 ntBASIC27.55■■■□□ 2
VPS8Q8N3P4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC27.55■■■□□ 2
VPS8Q8N3P4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC27.55■■■□□ 2
VPS8Q8N3P4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC27.55■■■□□ 2
VPS8Q8N3P4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 AC120498.9-201ENST00000339021 3867 ntBASIC27.54■■■□□ 2
VPS8Q8N3P4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC27.54■■■□□ 2
VPS8Q8N3P4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC27.54■■■□□ 2
VPS8Q8N3P4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 AC079776.4-201ENST00000511039 504 ntBASIC27.54■■■□□ 2
VPS8Q8N3P4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC27.54■■■□□ 2
VPS8Q8N3P4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC27.54■■■□□ 2
VPS8Q8N3P4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC27.54■■■□□ 2
VPS8Q8N3P4 AC006557.2-201ENST00000592985 1240 ntBASIC27.54■■■□□ 2
VPS8Q8N3P4 AL139424.1-201ENST00000607572 797 ntBASIC27.54■■■□□ 2
VPS8Q8N3P4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC27.54■■■□□ 2
VPS8Q8N3P4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC27.54■■■□□ 2
VPS8Q8N3P4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC27.54■■■□□ 2
VPS8Q8N3P4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC27.54■■■□□ 2
VPS8Q8N3P4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC27.53■■■□□ 2
VPS8Q8N3P4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
VPS8Q8N3P4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
VPS8Q8N3P4 ACTG1P4-201ENST00000425123 1122 ntBASIC27.53■■■□□ 2
VPS8Q8N3P4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC27.53■■■□□ 2
VPS8Q8N3P4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC27.53■■■□□ 2
VPS8Q8N3P4 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC27.53■■■□□ 2
VPS8Q8N3P4 AC145285.3-201ENST00000564603 959 ntBASIC27.53■■■□□ 2
VPS8Q8N3P4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC27.53■■■□□ 2
VPS8Q8N3P4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC27.53■■■□□ 2
VPS8Q8N3P4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC27.53■■■□□ 2
VPS8Q8N3P4 AC116407.3-201ENST00000623905 1129 ntBASIC27.53■■■□□ 2
VPS8Q8N3P4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
VPS8Q8N3P4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC27.53■■■□□ 2
VPS8Q8N3P4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
VPS8Q8N3P4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms