Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
KRT40Q6A162 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 EMBP1-201ENST00000458200 901 ntBASIC20.53■□□□□ 0.88
KRT40Q6A162 RN7SL606P-201ENST00000472779 293 ntBASIC20.53■□□□□ 0.88
KRT40Q6A162 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.53■□□□□ 0.88
KRT40Q6A162 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.53■□□□□ 0.88
KRT40Q6A162 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
KRT40Q6A162 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.53■□□□□ 0.88
KRT40Q6A162 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT40Q6A162 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT40Q6A162 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 FAAHP1-202ENST00000446499 1238 ntBASIC20.52■□□□□ 0.88
KRT40Q6A162 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.52■□□□□ 0.88
KRT40Q6A162 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
KRT40Q6A162 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
KRT40Q6A162 IFNL4P1-201ENST00000607083 540 ntBASIC20.52■□□□□ 0.88
KRT40Q6A162 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 AL031008.1-201ENST00000619963 541 ntBASIC20.52■□□□□ 0.88
KRT40Q6A162 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.52■□□□□ 0.88
KRT40Q6A162 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
KRT40Q6A162 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
KRT40Q6A162 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
KRT40Q6A162 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
KRT40Q6A162 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
KRT40Q6A162 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
KRT40Q6A162 TSSC2-201ENST00000450217 709 ntBASIC20.51■□□□□ 0.87
KRT40Q6A162 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.51■□□□□ 0.87
KRT40Q6A162 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
KRT40Q6A162 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
KRT40Q6A162 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.51■□□□□ 0.87
KRT40Q6A162 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.51■□□□□ 0.87
KRT40Q6A162 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT40Q6A162 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.51■□□□□ 0.87
KRT40Q6A162 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.51■□□□□ 0.87
KRT40Q6A162 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
KRT40Q6A162 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
KRT40Q6A162 AC139713.2-201ENST00000641328 2723 ntBASIC20.5■□□□□ 0.87
KRT40Q6A162 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 AC016734.2-201ENST00000624325 1377 ntBASIC20.5■□□□□ 0.87
KRT40Q6A162 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
KRT40Q6A162 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
KRT40Q6A162 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.5■□□□□ 0.87
KRT40Q6A162 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
KRT40Q6A162 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
KRT40Q6A162 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 AP002383.4-201ENST00000442518 975 ntBASIC20.5■□□□□ 0.87
KRT40Q6A162 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.5■□□□□ 0.87
KRT40Q6A162 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.5■□□□□ 0.87
KRT40Q6A162 GUSBP12-201ENST00000513727 720 ntBASIC20.5■□□□□ 0.87
KRT40Q6A162 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.5■□□□□ 0.87
KRT40Q6A162 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.5■□□□□ 0.87
KRT40Q6A162 AL592071.1-201ENST00000611956 408 ntBASIC20.5■□□□□ 0.87
KRT40Q6A162 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
KRT40Q6A162 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.5■□□□□ 0.87
KRT40Q6A162 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms