Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH1Q08174 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH1Q08174 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH1Q08174 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH1Q08174 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 AL845331.1-201ENST00000424978 1190 ntBASIC17.1■□□□□ 0.33
PCDH1Q08174 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.1■□□□□ 0.33
PCDH1Q08174 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH1Q08174 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDH1Q08174 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCDH1Q08174 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCDH1Q08174 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDH1Q08174 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
PCDH1Q08174 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 MIR1224-201ENST00000408193 85 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDH1Q08174 AC246785.2-201ENST00000432512 513 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.09■□□□□ 0.33
PCDH1Q08174 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 AC116407.4-201ENST00000623319 1061 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 AL590326.2-201ENST00000625139 305 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.09■□□□□ 0.33
PCDH1Q08174 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDH1Q08174 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDH1Q08174 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDH1Q08174 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH1Q08174 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH1Q08174 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.08■□□□□ 0.33
PCDH1Q08174 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH1Q08174 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDH1Q08174 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDH1Q08174 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDH1Q08174 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.08■□□□□ 0.33
PCDH1Q08174 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH1Q08174 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PCDH1Q08174 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PCDH1Q08174 AC125634.1-201ENST00000438758 1403 ntBASIC17.08■□□□□ 0.32
PCDH1Q08174 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDH1Q08174 AC005332.1-201ENST00000577698 1310 ntBASIC17.08■□□□□ 0.32
PCDH1Q08174 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms