Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MRE11P49959 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.69■□□□□ 0.9
MRE11P49959 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
MRE11P49959 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
MRE11P49959 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
MRE11P49959 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.68■□□□□ 0.9
MRE11P49959 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
MRE11P49959 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.68■□□□□ 0.9
MRE11P49959 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.68■□□□□ 0.9
MRE11P49959 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 LINC00554-201ENST00000564841 3011 ntBASIC20.68■□□□□ 0.9
MRE11P49959 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.68■□□□□ 0.9
MRE11P49959 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 AL603756.1-201ENST00000606511 2163 ntBASIC20.68■□□□□ 0.9
MRE11P49959 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MRE11P49959 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
MRE11P49959 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MRE11P49959 PCDHB17P-201ENST00000539533 2393 ntBASIC20.67■□□□□ 0.9
MRE11P49959 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
MRE11P49959 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
MRE11P49959 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MRE11P49959 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 KRT18P41-201ENST00000518924 1277 ntBASIC20.67■□□□□ 0.9
MRE11P49959 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.67■□□□□ 0.9
MRE11P49959 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.67■□□□□ 0.9
MRE11P49959 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
MRE11P49959 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MRE11P49959 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
MRE11P49959 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.66■□□□□ 0.9
MRE11P49959 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.66■□□□□ 0.9
MRE11P49959 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.66■□□□□ 0.9
MRE11P49959 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.66■□□□□ 0.9
MRE11P49959 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
MRE11P49959 AL691432.3-201ENST00000621860 400 ntBASIC20.66■□□□□ 0.9
MRE11P49959 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.66■□□□□ 0.9
MRE11P49959 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.66■□□□□ 0.9
MRE11P49959 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.66■□□□□ 0.9
MRE11P49959 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.66■□□□□ 0.9
MRE11P49959 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms