Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.85■□□□□ 0.93
NEDD4P46934 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NEDD4P46934 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.85■□□□□ 0.93
NEDD4P46934 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.85■□□□□ 0.93
NEDD4P46934 AC132008.2-207ENST00000454517 770 ntBASIC20.85■□□□□ 0.93
NEDD4P46934 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.85■□□□□ 0.93
NEDD4P46934 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.85■□□□□ 0.93
NEDD4P46934 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NEDD4P46934 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NEDD4P46934 REXO1L6P-202ENST00000619970 1078 ntBASIC20.85■□□□□ 0.93
NEDD4P46934 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
NEDD4P46934 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.85■□□□□ 0.93
NEDD4P46934 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.85■□□□□ 0.93
NEDD4P46934 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.85■□□□□ 0.93
NEDD4P46934 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
NEDD4P46934 GNAS-203ENST00000306120 1878 ntBASIC20.85■□□□□ 0.93
NEDD4P46934 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NEDD4P46934 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
NEDD4P46934 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.84■□□□□ 0.93
NEDD4P46934 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NEDD4P46934 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 AC005104.2-201ENST00000427818 678 ntBASIC20.84■□□□□ 0.93
NEDD4P46934 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.84■□□□□ 0.93
NEDD4P46934 EMBP1-201ENST00000458200 901 ntBASIC20.84■□□□□ 0.93
NEDD4P46934 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.84■□□□□ 0.93
NEDD4P46934 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.84■□□□□ 0.93
NEDD4P46934 AL691432.3-201ENST00000621860 400 ntBASIC20.84■□□□□ 0.93
NEDD4P46934 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
NEDD4P46934 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 KRT8P10-201ENST00000450021 1447 ntBASIC20.84■□□□□ 0.93
NEDD4P46934 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
NEDD4P46934 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
NEDD4P46934 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NEDD4P46934 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.83■□□□□ 0.93
NEDD4P46934 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.83■□□□□ 0.93
NEDD4P46934 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.83■□□□□ 0.93
NEDD4P46934 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.83■□□□□ 0.93
NEDD4P46934 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.83■□□□□ 0.93
NEDD4P46934 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.83■□□□□ 0.93
NEDD4P46934 AC109462.3-201ENST00000573934 613 ntBASIC20.83■□□□□ 0.93
NEDD4P46934 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 AL121894.2-201ENST00000602977 491 ntBASIC20.83■□□□□ 0.93
NEDD4P46934 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.83■□□□□ 0.93
NEDD4P46934 AD001527.2-201ENST00000622994 785 ntBASIC20.83■□□□□ 0.93
NEDD4P46934 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
NEDD4P46934 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NEDD4P46934 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NEDD4P46934 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NEDD4P46934 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.83■□□□□ 0.93
NEDD4P46934 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.83■□□□□ 0.92
NEDD4P46934 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.83■□□□□ 0.92
NEDD4P46934 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEDD4P46934 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEDD4P46934 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
NEDD4P46934 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
NEDD4P46934 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
NEDD4P46934 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NEDD4P46934 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NEDD4P46934 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
NEDD4P46934 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NEDD4P46934 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.83■□□□□ 0.92
NEDD4P46934 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NEDD4P46934 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.82■□□□□ 0.92
NEDD4P46934 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms