Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 AC079776.2-201ENST00000641154 1609 ntBASIC19.94■□□□□ 0.78
CIITAP33076 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CIITAP33076 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.93■□□□□ 0.78
CIITAP33076 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.93■□□□□ 0.78
CIITAP33076 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.93■□□□□ 0.78
CIITAP33076 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
CIITAP33076 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.93■□□□□ 0.78
CIITAP33076 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.93■□□□□ 0.78
CIITAP33076 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CIITAP33076 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CIITAP33076 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CIITAP33076 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.93■□□□□ 0.78
CIITAP33076 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.92■□□□□ 0.78
CIITAP33076 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
CIITAP33076 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 SPDYE21P-201ENST00000413323 827 ntBASIC19.92■□□□□ 0.78
CIITAP33076 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.92■□□□□ 0.78
CIITAP33076 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.92■□□□□ 0.78
CIITAP33076 AL139288.1-201ENST00000623748 933 ntBASIC19.92■□□□□ 0.78
CIITAP33076 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.92■□□□□ 0.78
CIITAP33076 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.92■□□□□ 0.78
CIITAP33076 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CIITAP33076 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CIITAP33076 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CIITAP33076 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CIITAP33076 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.91■□□□□ 0.78
CIITAP33076 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
CIITAP33076 MYCLP1-201ENST00000372451 1075 ntBASIC19.91■□□□□ 0.78
CIITAP33076 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.91■□□□□ 0.78
CIITAP33076 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CIITAP33076 IGHV3-52-201ENST00000519770 353 ntBASIC19.91■□□□□ 0.78
CIITAP33076 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 SART3-203ENST00000546611 1184 ntBASIC19.91■□□□□ 0.78
CIITAP33076 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.91■□□□□ 0.78
CIITAP33076 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.91■□□□□ 0.78
CIITAP33076 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CIITAP33076 AL356309.3-201ENST00000624132 1934 ntBASIC19.91■□□□□ 0.78
CIITAP33076 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.91■□□□□ 0.78
CIITAP33076 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.91■□□□□ 0.78
CIITAP33076 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CIITAP33076 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 AC007613.1-201ENST00000572811 2597 ntBASIC19.9■□□□□ 0.78
CIITAP33076 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CIITAP33076 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CIITAP33076 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CIITAP33076 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms