Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC3P19447 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.5■□□□□ 0.87
ERCC3P19447 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC3P19447 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 MED15P5-201ENST00000423150 992 ntBASIC20.49■□□□□ 0.87
ERCC3P19447 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 Z83851.2-201ENST00000609564 659 ntBASIC20.49■□□□□ 0.87
ERCC3P19447 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.49■□□□□ 0.87
ERCC3P19447 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 AC107918.4-202ENST00000641623 219 ntBASIC20.49■□□□□ 0.87
ERCC3P19447 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC3P19447 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 AC097374.2-201ENST00000618617 1306 ntBASIC20.49■□□□□ 0.87
ERCC3P19447 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC3P19447 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.49■□□□□ 0.87
ERCC3P19447 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.48■□□□□ 0.87
ERCC3P19447 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.48■□□□□ 0.87
ERCC3P19447 ESPNP-201ENST00000270691 2015 ntBASIC20.48■□□□□ 0.87
ERCC3P19447 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.48■□□□□ 0.87
ERCC3P19447 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
ERCC3P19447 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 FAM197Y3-203ENST00000618346 717 ntBASIC20.48■□□□□ 0.87
ERCC3P19447 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
ERCC3P19447 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.48■□□□□ 0.87
ERCC3P19447 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC3P19447 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
ERCC3P19447 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
ERCC3P19447 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
ERCC3P19447 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC3P19447 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.47■□□□□ 0.87
ERCC3P19447 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.47■□□□□ 0.87
ERCC3P19447 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 AC105339.3-201ENST00000560043 636 ntBASIC20.47■□□□□ 0.87
ERCC3P19447 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.47■□□□□ 0.87
ERCC3P19447 HTR7P1-202ENST00000624664 4411 ntBASIC20.47■□□□□ 0.87
ERCC3P19447 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.47■□□□□ 0.87
ERCC3P19447 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
ERCC3P19447 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.47■□□□□ 0.87
ERCC3P19447 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC3P19447 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms