Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGB1P09429 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGB1P09429 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HMGB1P09429 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGB1P09429 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
HMGB1P09429 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.91■□□□□ 0.94
HMGB1P09429 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGB1P09429 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGB1P09429 AC005336.2-201ENST00000593183 939 ntBASIC20.91■□□□□ 0.94
HMGB1P09429 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 AP000550.4-202ENST00000639755 178 ntBASIC20.91■□□□□ 0.94
HMGB1P09429 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGB1P09429 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HMGB1P09429 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.9■□□□□ 0.94
HMGB1P09429 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.9■□□□□ 0.94
HMGB1P09429 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HMGB1P09429 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HMGB1P09429 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGB1P09429 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGB1P09429 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGB1P09429 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGB1P09429 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
HMGB1P09429 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
HMGB1P09429 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
HMGB1P09429 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
HMGB1P09429 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.89■□□□□ 0.94
HMGB1P09429 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGB1P09429 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
HMGB1P09429 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.89■□□□□ 0.94
HMGB1P09429 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HMGB1P09429 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.89■□□□□ 0.93
HMGB1P09429 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
HMGB1P09429 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB1P09429 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.89■□□□□ 0.93
HMGB1P09429 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.89■□□□□ 0.93
HMGB1P09429 AC122714.2-201ENST00000502787 707 ntBASIC20.89■□□□□ 0.93
HMGB1P09429 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB1P09429 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGB1P09429 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB1P09429 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGB1P09429 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
HMGB1P09429 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 PP12613-201ENST00000424958 2230 ntBASIC20.89■□□□□ 0.93
HMGB1P09429 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGB1P09429 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGB1P09429 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 DRAXINP1-201ENST00000437611 948 ntBASIC20.88■□□□□ 0.93
HMGB1P09429 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.88■□□□□ 0.93
HMGB1P09429 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
HMGB1P09429 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.88■□□□□ 0.93
HMGB1P09429 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGB1P09429 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGB1P09429 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms