Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PNMA6B-201ENST00000538162 1200 ntBASIC13.78□□□□□ -0.2
CXCL1P09341 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.78□□□□□ -0.2
CXCL1P09341 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.78□□□□□ -0.2
CXCL1P09341 C1QL1P1-201ENST00000568105 661 ntBASIC13.78□□□□□ -0.2
CXCL1P09341 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC13.78□□□□□ -0.2
CXCL1P09341 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CXCL1P09341 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CXCL1P09341 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 MYLKP1-201ENST00000509077 1580 ntBASIC13.78□□□□□ -0.2
CXCL1P09341 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CXCL1P09341 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CXCL1P09341 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.78□□□□□ -0.2
CXCL1P09341 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CXCL1P09341 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.78□□□□□ -0.2
CXCL1P09341 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CXCL1P09341 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CXCL1P09341 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CXCL1P09341 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CXCL1P09341 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.77□□□□□ -0.2
CXCL1P09341 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.77□□□□□ -0.2
CXCL1P09341 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
CXCL1P09341 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
CXCL1P09341 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CXCL1P09341 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CXCL1P09341 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CXCL1P09341 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.77□□□□□ -0.21
CXCL1P09341 OR2A1-AS1-207ENST00000486094 819 ntBASIC13.77□□□□□ -0.21
CXCL1P09341 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC13.77□□□□□ -0.21
CXCL1P09341 KRT8P32-201ENST00000512863 1461 ntBASIC13.77□□□□□ -0.21
CXCL1P09341 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CXCL1P09341 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.77□□□□□ -0.21
CXCL1P09341 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 HLA-A-209ENST00000638375 975 ntBASIC13.77□□□□□ -0.21
CXCL1P09341 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CXCL1P09341 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.77□□□□□ -0.21
CXCL1P09341 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.76□□□□□ -0.21
CXCL1P09341 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.76□□□□□ -0.21
CXCL1P09341 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.76□□□□□ -0.21
CXCL1P09341 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CXCL1P09341 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CXCL1P09341 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.76□□□□□ -0.21
CXCL1P09341 METTL15-202ENST00000403099 795 ntTSL 5 BASIC13.76□□□□□ -0.21
CXCL1P09341 GATS-209ENST00000454084 1030 ntTSL 3 BASIC13.76□□□□□ -0.21
CXCL1P09341 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CXCL1P09341 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC13.76□□□□□ -0.21
CXCL1P09341 AL121832.2-201ENST00000610979 668 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms