Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC10.95□□□□□ -0.66
APOBP04114 SNCG-201ENST00000348795 684 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
APOBP04114 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 U91328.1-201ENST00000437528 223 ntBASIC10.95□□□□□ -0.66
APOBP04114 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC10.95□□□□□ -0.66
APOBP04114 BAD-207ENST00000544785 525 ntTSL 3 BASIC10.95□□□□□ -0.66
APOBP04114 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC10.95□□□□□ -0.66
APOBP04114 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 MIR1909-201ENST00000411312 80 ntBASIC10.95□□□□□ -0.66
APOBP04114 AC125807.1-201ENST00000483097 614 ntBASIC10.95□□□□□ -0.66
APOBP04114 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC10.95□□□□□ -0.66
APOBP04114 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC10.95□□□□□ -0.66
APOBP04114 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC10.95□□□□□ -0.66
APOBP04114 AL135744.1-201ENST00000565098 629 ntBASIC10.95□□□□□ -0.66
APOBP04114 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC10.95□□□□□ -0.66
APOBP04114 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC10.95□□□□□ -0.66
APOBP04114 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
APOBP04114 GOLGA6L11P-201ENST00000417252 1298 ntBASIC10.94□□□□□ -0.66
APOBP04114 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 CNN2P2-201ENST00000443536 909 ntBASIC10.94□□□□□ -0.66
APOBP04114 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC10.94□□□□□ -0.66
APOBP04114 CNN2P3-201ENST00000450201 906 ntBASIC10.94□□□□□ -0.66
APOBP04114 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC10.94□□□□□ -0.66
APOBP04114 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
APOBP04114 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC10.94□□□□□ -0.66
APOBP04114 AL136317.3-201ENST00000618497 906 ntBASIC10.94□□□□□ -0.66
APOBP04114 AP001059.3-201ENST00000619053 235 ntBASIC10.94□□□□□ -0.66
APOBP04114 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 DDT-204ENST00000404092 805 ntTSL 3 BASIC10.94□□□□□ -0.66
APOBP04114 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 GATB-205ENST00000508611 605 ntTSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 SSH2-211ENST00000590153 570 ntTSL 4 BASIC10.94□□□□□ -0.66
APOBP04114 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC10.94□□□□□ -0.66
APOBP04114 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 KRT18P32-201ENST00000424695 1287 ntBASIC10.94□□□□□ -0.66
APOBP04114 AC092580.3-201ENST00000430932 139 ntBASIC10.94□□□□□ -0.66
APOBP04114 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC10.94□□□□□ -0.66
APOBP04114 CR383656.12-201ENST00000549567 513 ntBASIC10.94□□□□□ -0.66
APOBP04114 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
APOBP04114 COX5BP8-201ENST00000416911 349 ntBASIC10.94□□□□□ -0.66
APOBP04114 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC10.94□□□□□ -0.66
APOBP04114 AC112191.1-201ENST00000523689 701 ntBASIC10.94□□□□□ -0.66
APOBP04114 AC243562.1-201ENST00000560672 389 ntBASIC10.94□□□□□ -0.66
APOBP04114 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
APOBP04114 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 TDG-209ENST00000544861 1387 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 MIR346-201ENST00000362234 95 ntBASIC10.93□□□□□ -0.66
APOBP04114 CALY-202ENST00000368555 783 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 EDF1-203ENST00000371649 790 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC10.93□□□□□ -0.66
APOBP04114 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC10.93□□□□□ -0.66
APOBP04114 SLC25A39P2-201ENST00000537614 270 ntBASIC10.93□□□□□ -0.66
APOBP04114 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 AC007064.4-201ENST00000637740 555 ntBASIC10.93□□□□□ -0.66
APOBP04114 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 AC126763.1-201ENST00000552015 2118 ntBASIC10.93□□□□□ -0.66
APOBP04114 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC10.93□□□□□ -0.66
APOBP04114 AL096828.2-201ENST00000567259 1965 ntBASIC10.93□□□□□ -0.66
APOBP04114 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
APOBP04114 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
APOBP04114 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
APOBP04114 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms