Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.55■□□□□ 0.88
COL2A1P02458 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.55■□□□□ 0.88
COL2A1P02458 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.55■□□□□ 0.88
COL2A1P02458 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COL2A1P02458 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
COL2A1P02458 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL2A1P02458 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL2A1P02458 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
COL2A1P02458 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.54■□□□□ 0.88
COL2A1P02458 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.54■□□□□ 0.88
COL2A1P02458 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL2A1P02458 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.53■□□□□ 0.88
COL2A1P02458 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL2A1P02458 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL2A1P02458 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.53■□□□□ 0.88
COL2A1P02458 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL2A1P02458 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC20.53■□□□□ 0.88
COL2A1P02458 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL2A1P02458 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.53■□□□□ 0.88
COL2A1P02458 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC20.53■□□□□ 0.88
COL2A1P02458 KRT19P2-202ENST00000557173 1012 ntBASIC20.53■□□□□ 0.88
COL2A1P02458 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.53■□□□□ 0.88
COL2A1P02458 LINC01451-201ENST00000623792 534 ntBASIC20.53■□□□□ 0.88
COL2A1P02458 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL2A1P02458 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL2A1P02458 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
COL2A1P02458 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.53■□□□□ 0.88
COL2A1P02458 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL2A1P02458 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.53■□□□□ 0.88
COL2A1P02458 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 AL135999.2-201ENST00000622438 1686 ntBASIC20.52■□□□□ 0.88
COL2A1P02458 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 AC254562.1-201ENST00000417586 456 ntBASIC20.52■□□□□ 0.88
COL2A1P02458 PAWRP1-201ENST00000451083 565 ntBASIC20.52■□□□□ 0.88
COL2A1P02458 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
COL2A1P02458 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.52■□□□□ 0.88
COL2A1P02458 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.52■□□□□ 0.88
COL2A1P02458 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
COL2A1P02458 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.52■□□□□ 0.88
COL2A1P02458 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.52■□□□□ 0.88
COL2A1P02458 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL2A1P02458 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL2A1P02458 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 AL139327.4-201ENST00000612362 153 ntBASIC20.51■□□□□ 0.87
COL2A1P02458 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.51■□□□□ 0.87
COL2A1P02458 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.51■□□□□ 0.87
COL2A1P02458 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL2A1P02458 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.51■□□□□ 0.87
COL2A1P02458 ELL2P1-201ENST00000413990 1906 ntBASIC20.51■□□□□ 0.87
COL2A1P02458 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.51■□□□□ 0.87
COL2A1P02458 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL2A1P02458 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms