Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.28■□□□□ 0.36
TNFP01375 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFP01375 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.28■□□□□ 0.36
TNFP01375 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFP01375 AC098831.1-202ENST00000438821 336 ntBASIC17.28■□□□□ 0.36
TNFP01375 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFP01375 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.28■□□□□ 0.36
TNFP01375 AC004817.3-201ENST00000602957 2129 ntBASIC17.28■□□□□ 0.36
TNFP01375 AL671883.3-201ENST00000603274 991 ntBASIC17.28■□□□□ 0.36
TNFP01375 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TNFP01375 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TNFP01375 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TNFP01375 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.28■□□□□ 0.36
TNFP01375 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TNFP01375 KLF4P1-201ENST00000412782 1185 ntBASIC17.27■□□□□ 0.36
TNFP01375 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.27■□□□□ 0.36
TNFP01375 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 IGHV3-22-201ENST00000520721 359 ntBASIC17.27■□□□□ 0.36
TNFP01375 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.27■□□□□ 0.36
TNFP01375 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.27■□□□□ 0.36
TNFP01375 AC117500.6-201ENST00000624871 588 ntBASIC17.27■□□□□ 0.36
TNFP01375 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TNFP01375 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
TNFP01375 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.27■□□□□ 0.36
TNFP01375 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFP01375 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.27■□□□□ 0.35
TNFP01375 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFP01375 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.27■□□□□ 0.35
TNFP01375 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.27■□□□□ 0.35
TNFP01375 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFP01375 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TNFP01375 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TNFP01375 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
TNFP01375 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
TNFP01375 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 KRT18P55-202ENST00000578578 1546 ntBASIC17.26■□□□□ 0.35
TNFP01375 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.26■□□□□ 0.35
TNFP01375 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.26■□□□□ 0.35
TNFP01375 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 AC003669.1-201ENST00000334569 611 ntBASIC17.26■□□□□ 0.35
TNFP01375 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.26■□□□□ 0.35
TNFP01375 SIGLEC30P-201ENST00000455569 941 ntBASIC17.26■□□□□ 0.35
TNFP01375 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.26■□□□□ 0.35
TNFP01375 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.26■□□□□ 0.35
TNFP01375 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 AC006557.2-201ENST00000592985 1240 ntBASIC17.26■□□□□ 0.35
TNFP01375 AC019129.2-201ENST00000609837 1235 ntBASIC17.26■□□□□ 0.35
TNFP01375 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TNFP01375 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.26■□□□□ 0.35
TNFP01375 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TNFP01375 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TNFP01375 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms