Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 RPSAP43-201ENST00000402237 625 ntBASIC17.3■□□□□ 0.36
SDC3O75056 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.3■□□□□ 0.36
SDC3O75056 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.3■□□□□ 0.36
SDC3O75056 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.3■□□□□ 0.36
SDC3O75056 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.3■□□□□ 0.36
SDC3O75056 AC006557.2-201ENST00000592985 1240 ntBASIC17.3■□□□□ 0.36
SDC3O75056 AC073592.4-201ENST00000623827 446 ntBASIC17.3■□□□□ 0.36
SDC3O75056 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 AC073592.3-201ENST00000625118 1834 ntBASIC17.3■□□□□ 0.36
SDC3O75056 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.3■□□□□ 0.36
SDC3O75056 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.3■□□□□ 0.36
SDC3O75056 HTR7P1-202ENST00000624664 4411 ntBASIC17.3■□□□□ 0.36
SDC3O75056 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDC3O75056 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.3■□□□□ 0.36
SDC3O75056 AL096828.2-201ENST00000567259 1965 ntBASIC17.29■□□□□ 0.36
SDC3O75056 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SDC3O75056 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 KRT18P27-201ENST00000427733 1299 ntBASIC17.29■□□□□ 0.36
SDC3O75056 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.29■□□□□ 0.36
SDC3O75056 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.29■□□□□ 0.36
SDC3O75056 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
SDC3O75056 AC108751.1-201ENST00000490852 363 ntBASIC17.29■□□□□ 0.36
SDC3O75056 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.29■□□□□ 0.36
SDC3O75056 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.29■□□□□ 0.36
SDC3O75056 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SDC3O75056 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SDC3O75056 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.28■□□□□ 0.36
SDC3O75056 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SDC3O75056 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.28■□□□□ 0.36
SDC3O75056 AP000974.1-201ENST00000623909 2387 ntBASIC17.28■□□□□ 0.36
SDC3O75056 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SDC3O75056 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 AC073621.1-201ENST00000392730 636 ntBASIC17.28■□□□□ 0.36
SDC3O75056 AC103564.2-201ENST00000432853 1299 ntBASIC17.28■□□□□ 0.36
SDC3O75056 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SDC3O75056 AC112482.1-201ENST00000492080 688 ntBASIC17.28■□□□□ 0.36
SDC3O75056 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.28■□□□□ 0.36
SDC3O75056 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.28■□□□□ 0.36
SDC3O75056 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.28■□□□□ 0.36
SDC3O75056 MIR3687-2-201ENST00000577708 61 ntBASIC17.28■□□□□ 0.36
SDC3O75056 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 AC064836.3-201ENST00000607928 673 ntBASIC17.28■□□□□ 0.36
SDC3O75056 MIR3687-1-201ENST00000614492 61 ntBASIC17.28■□□□□ 0.36
SDC3O75056 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
SDC3O75056 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.28■□□□□ 0.36
SDC3O75056 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.28■□□□□ 0.36
SDC3O75056 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.28■□□□□ 0.36
SDC3O75056 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDC3O75056 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.28■□□□□ 0.36
SDC3O75056 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.27■□□□□ 0.36
SDC3O75056 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.27■□□□□ 0.36
SDC3O75056 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.27■□□□□ 0.36
SDC3O75056 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SDC3O75056 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms