Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
LMX1BO60663 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LMX1BO60663 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
LMX1BO60663 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LMX1BO60663 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 LINC00167-201ENST00000530583 1419 ntBASIC15.61■□□□□ 0.09
LMX1BO60663 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 AL645929.1-201ENST00000420084 975 ntBASIC15.61■□□□□ 0.09
LMX1BO60663 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1BO60663 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1BO60663 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.61■□□□□ 0.09
LMX1BO60663 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LMX1BO60663 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LMX1BO60663 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LMX1BO60663 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1BO60663 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
LMX1BO60663 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
LMX1BO60663 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 HBZP1-201ENST00000354915 429 ntBASIC15.6■□□□□ 0.09
LMX1BO60663 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 DUTP2-201ENST00000519164 463 ntBASIC15.6■□□□□ 0.09
LMX1BO60663 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1BO60663 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.6■□□□□ 0.09
LMX1BO60663 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1BO60663 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1BO60663 NPAP1P7-201ENST00000613027 823 ntBASIC15.6■□□□□ 0.09
LMX1BO60663 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.6■□□□□ 0.09
LMX1BO60663 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1BO60663 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LMX1BO60663 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1BO60663 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1BO60663 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 SIRPAP1-201ENST00000448467 1770 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms