Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH5O43196 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 AL161938.1-201ENST00000569833 2180 ntBASIC24.23■■□□□ 1.47
MSH5O43196 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC24.23■■□□□ 1.47
MSH5O43196 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
MSH5O43196 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH5O43196 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
MSH5O43196 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH5O43196 AC098862.1-201ENST00000504991 413 ntBASIC24.23■■□□□ 1.47
MSH5O43196 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH5O43196 NAA38-203ENST00000575071 553 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH5O43196 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH5O43196 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 SPEG-225ENST00000617028 815 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
MSH5O43196 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
MSH5O43196 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH5O43196 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 CEP83-AS1-201ENST00000623122 2482 ntBASIC24.22■■□□□ 1.47
MSH5O43196 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
MSH5O43196 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 AC006511.2-201ENST00000388966 660 ntBASIC24.22■■□□□ 1.47
MSH5O43196 MRPL3P1-201ENST00000400109 1033 ntBASIC24.22■■□□□ 1.47
MSH5O43196 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 AC114495.2-201ENST00000452686 437 ntBASIC24.22■■□□□ 1.47
MSH5O43196 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH5O43196 AL662844.1-201ENST00000546340 181 ntBASIC24.22■■□□□ 1.47
MSH5O43196 AC116348.1-201ENST00000562525 528 ntTSL 3 BASIC24.22■■□□□ 1.47
MSH5O43196 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 AC096586.1-201ENST00000610267 561 ntBASIC24.22■■□□□ 1.47
MSH5O43196 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH5O43196 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH5O43196 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH5O43196 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH5O43196 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC24.21■■□□□ 1.47
MSH5O43196 AP001271.2-201ENST00000624018 1556 ntBASIC24.21■■□□□ 1.47
MSH5O43196 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
MSH5O43196 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 AC008549.2-201ENST00000333482 706 ntBASIC24.21■■□□□ 1.47
MSH5O43196 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 USP9YP2-201ENST00000504503 1000 ntBASIC24.21■■□□□ 1.47
MSH5O43196 USP9YP1-201ENST00000513521 1002 ntBASIC24.21■■□□□ 1.47
MSH5O43196 AP002981.1-201ENST00000517692 975 ntBASIC24.21■■□□□ 1.47
MSH5O43196 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 TPSP2-201ENST00000561760 610 ntBASIC24.21■■□□□ 1.47
MSH5O43196 AC005412.1-201ENST00000580812 1049 ntBASIC24.21■■□□□ 1.47
MSH5O43196 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH5O43196 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH5O43196 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
MSH5O43196 AC093525.10-201ENST00000625130 1569 ntBASIC24.2■■□□□ 1.47
MSH5O43196 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.47
MSH5O43196 ANKRD20A10P-201ENST00000457591 1515 ntBASIC24.2■■□□□ 1.47
MSH5O43196 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
MSH5O43196 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC24.2■■□□□ 1.46
MSH5O43196 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
MSH5O43196 TOB2P1-201ENST00000469761 992 ntBASIC24.2■■□□□ 1.46
MSH5O43196 RPL5P23-201ENST00000496040 868 ntBASIC24.2■■□□□ 1.46
MSH5O43196 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC24.2■■□□□ 1.46
MSH5O43196 CALM3-211ENST00000598871 561 ntTSL 4 BASIC24.2■■□□□ 1.46
MSH5O43196 AC138894.3-201ENST00000603787 634 ntBASIC24.2■■□□□ 1.46
MSH5O43196 AC022919.1-201ENST00000624979 626 ntBASIC24.2■■□□□ 1.46
MSH5O43196 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH5O43196 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH5O43196 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms