Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.13■□□□□ 0.97
FOXN1O15353 AL606495.2-201ENST00000605867 535 ntBASIC21.13■□□□□ 0.97
FOXN1O15353 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN1O15353 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN1O15353 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.13■□□□□ 0.97
FOXN1O15353 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN1O15353 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN1O15353 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
FOXN1O15353 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FOXN1O15353 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
FOXN1O15353 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.13■□□□□ 0.97
FOXN1O15353 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
FOXN1O15353 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXN1O15353 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.12■□□□□ 0.97
FOXN1O15353 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXN1O15353 AL109659.2-201ENST00000606809 1674 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 AL354751.1-201ENST00000412768 1863 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 OR8S1-201ENST00000310194 1080 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXN1O15353 LAGE3P1-201ENST00000425356 484 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXN1O15353 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.12■□□□□ 0.97
FOXN1O15353 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.12■□□□□ 0.97
FOXN1O15353 AL031432.2-201ENST00000566714 459 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.12■□□□□ 0.97
FOXN1O15353 AL928711.1-201ENST00000570165 459 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.12■□□□□ 0.97
FOXN1O15353 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.12■□□□□ 0.97
FOXN1O15353 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.12■□□□□ 0.97
FOXN1O15353 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 AL133373.2-201ENST00000623187 2828 ntBASIC21.12■□□□□ 0.97
FOXN1O15353 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.12■□□□□ 0.97
FOXN1O15353 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FOXN1O15353 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
FOXN1O15353 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.11■□□□□ 0.97
FOXN1O15353 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
FOXN1O15353 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
FOXN1O15353 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.11■□□□□ 0.97
FOXN1O15353 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.11■□□□□ 0.97
FOXN1O15353 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
FOXN1O15353 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.11■□□□□ 0.97
FOXN1O15353 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21.11■□□□□ 0.97
FOXN1O15353 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.11■□□□□ 0.97
FOXN1O15353 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
FOXN1O15353 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXN1O15353 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
FOXN1O15353 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 AC005332.8-201ENST00000622750 2735 ntBASIC21.1■□□□□ 0.97
FOXN1O15353 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
FOXN1O15353 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 KRT8P32-201ENST00000512863 1461 ntBASIC21.1■□□□□ 0.97
FOXN1O15353 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.1■□□□□ 0.97
FOXN1O15353 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXN1O15353 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXN1O15353 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXN1O15353 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FOXN1O15353 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.1■□□□□ 0.97
FOXN1O15353 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
FOXN1O15353 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.1■□□□□ 0.97
FOXN1O15353 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms