Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CUX2O14529 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC30.06■■■□□ 2.4
CUX2O14529 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
CUX2O14529 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC30.06■■■□□ 2.4
CUX2O14529 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC30.05■■■□□ 2.4
CUX2O14529 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CUX2O14529 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
CUX2O14529 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX2O14529 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CUX2O14529 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX2O14529 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX2O14529 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CUX2O14529 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC30.05■■■□□ 2.4
CUX2O14529 PTCHD3P3-201ENST00000403073 906 ntBASIC30.05■■■□□ 2.4
CUX2O14529 BCYRN1-201ENST00000418539 200 ntBASIC30.05■■■□□ 2.4
CUX2O14529 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC30.05■■■□□ 2.4
CUX2O14529 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC30.05■■■□□ 2.4
CUX2O14529 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX2O14529 AL499627.1-201ENST00000569373 2188 ntBASIC30.04■■■□□ 2.4
CUX2O14529 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC30.04■■■□□ 2.4
CUX2O14529 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
CUX2O14529 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX2O14529 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC30.04■■■□□ 2.4
CUX2O14529 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC30.04■■■□□ 2.4
CUX2O14529 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX2O14529 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX2O14529 AC092506.1-202ENST00000401022 528 ntBASIC30.04■■■□□ 2.4
CUX2O14529 TSSK5P-201ENST00000423978 907 ntBASIC30.04■■■□□ 2.4
CUX2O14529 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC30.04■■■□□ 2.4
CUX2O14529 TMPRSS11CP-201ENST00000453277 683 ntBASIC30.04■■■□□ 2.4
CUX2O14529 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
CUX2O14529 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CUX2O14529 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX2O14529 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX2O14529 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
CUX2O14529 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC30.03■■■□□ 2.4
CUX2O14529 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
CUX2O14529 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
CUX2O14529 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC30.03■■■□□ 2.4
CUX2O14529 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC30.03■■■□□ 2.4
CUX2O14529 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC30.03■■■□□ 2.4
CUX2O14529 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CUX2O14529 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX2O14529 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC30.02■■■□□ 2.4
CUX2O14529 AC007952.6-201ENST00000573168 2673 ntBASIC30.02■■■□□ 2.4
CUX2O14529 AC003957.1-201ENST00000625108 2673 ntBASIC30.02■■■□□ 2.4
CUX2O14529 AC112492.5-201ENST00000421897 457 ntBASIC30.02■■■□□ 2.4
CUX2O14529 AC243562.1-201ENST00000560672 389 ntBASIC30.02■■■□□ 2.4
CUX2O14529 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CUX2O14529 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX2O14529 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX2O14529 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC30.02■■■□□ 2.4
CUX2O14529 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC30.02■■■□□ 2.4
CUX2O14529 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC30.01■■■□□ 2.4
CUX2O14529 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC30.01■■■□□ 2.4
CUX2O14529 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC30.01■■■□□ 2.4
CUX2O14529 AC140912.1-201ENST00000577171 1054 ntBASIC30.01■■■□□ 2.4
CUX2O14529 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC30.01■■■□□ 2.4
CUX2O14529 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC30.01■■■□□ 2.39
CUX2O14529 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CUX2O14529 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC30.01■■■□□ 2.39
CUX2O14529 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX2O14529 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.39
CUX2O14529 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
CUX2O14529 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
CUX2O14529 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC30.01■■■□□ 2.39
CUX2O14529 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC30■■■□□ 2.39
CUX2O14529 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
CUX2O14529 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CUX2O14529 AC098614.1-201ENST00000368528 745 ntBASIC30■■■□□ 2.39
CUX2O14529 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
CUX2O14529 AL671277.1-201ENST00000429656 993 ntBASIC30■■■□□ 2.39
CUX2O14529 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC30■■■□□ 2.39
CUX2O14529 AL135744.1-201ENST00000565098 629 ntBASIC30■■■□□ 2.39
CUX2O14529 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC30■■■□□ 2.39
CUX2O14529 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC30■■■□□ 2.39
CUX2O14529 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC30■■■□□ 2.39
CUX2O14529 TBC1D3P5-201ENST00000579401 1545 ntBASIC30■■■□□ 2.39
CUX2O14529 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC30■■■□□ 2.39
CUX2O14529 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 AC103564.2-201ENST00000432853 1299 ntBASIC29.99■■■□□ 2.39
CUX2O14529 AC022210.1-201ENST00000449856 793 ntBASIC29.99■■■□□ 2.39
CUX2O14529 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC29.99■■■□□ 2.39
CUX2O14529 CDK4-206ENST00000549606 558 ntTSL 2 BASIC29.99■■■□□ 2.39
CUX2O14529 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC29.99■■■□□ 2.39
CUX2O14529 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
CUX2O14529 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC29.99■■■□□ 2.39
CUX2O14529 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
CUX2O14529 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
CUX2O14529 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms