Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 WDR53-203ENST00000429115 683 ntTSL 2 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 SLC25A6P2-201ENST00000497974 877 ntBASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC011467.4-201ENST00000594891 528 ntBASIC30.44■■■□□ 2.46
CCDC88BA6NC98 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88BA6NC98 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 WIZP1-201ENST00000531444 2299 ntBASIC30.43■■■□□ 2.46
CCDC88BA6NC98 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 AL121761.2-201ENST00000598007 1648 ntBASIC30.43■■■□□ 2.46
CCDC88BA6NC98 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 AC023141.5-201ENST00000458585 616 ntBASIC30.43■■■□□ 2.46
CCDC88BA6NC98 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 CFL1-212ENST00000531413 636 ntTSL 3 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88BA6NC98 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 MYCLP1-201ENST00000372451 1075 ntBASIC30.42■■■□□ 2.46
CCDC88BA6NC98 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 REM2-202ENST00000536884 1331 ntTSL 2 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 AC004835.2-201ENST00000603762 682 ntBASIC30.42■■■□□ 2.46
CCDC88BA6NC98 AL096865.1-201ENST00000606796 927 ntBASIC30.42■■■□□ 2.46
CCDC88BA6NC98 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC30.42■■■□□ 2.46
CCDC88BA6NC98 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 PI4KAP1-204ENST00000612579 1703 ntBASIC30.41■■■□□ 2.46
CCDC88BA6NC98 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 LHX6-205ENST00000464484 666 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 REXO1L3P-201ENST00000622202 1288 ntBASIC30.41■■■□□ 2.46
CCDC88BA6NC98 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88BA6NC98 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 FALEC-201ENST00000416894 566 ntTSL 3 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 FAM185BP-201ENST00000443595 716 ntBASIC30.4■■■□□ 2.46
CCDC88BA6NC98 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88BA6NC98 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 AC087163.2-201ENST00000457299 853 ntBASIC30.39■■■□□ 2.46
CCDC88BA6NC98 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 RPL28-209ENST00000560055 670 ntTSL 3 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 AC092364.2-202ENST00000597012 1073 ntBASIC30.39■■■□□ 2.46
CCDC88BA6NC98 AC009093.7-201ENST00000623853 1223 ntBASIC30.39■■■□□ 2.46
CCDC88BA6NC98 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88BA6NC98 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC30.39■■■□□ 2.45
CCDC88BA6NC98 AP000997.3-201ENST00000623333 2250 ntBASIC30.38■■■□□ 2.45
CCDC88BA6NC98 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC30.38■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms