Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC005336.2-201ENST00000593183 939 ntBASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AC097374.2-201ENST00000618617 1306 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 DRAXINP1-201ENST00000437611 948 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 TPSP2-201ENST00000561760 610 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AP005901.3-202ENST00000581653 237 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 AC010460.3-201ENST00000511359 1579 ntBASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.8■□□□□ 0.28
ATG4BQ9Y4P1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 AC125634.1-201ENST00000438758 1403 ntBASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 AC246785.2-201ENST00000432512 513 ntBASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MIR3180-1-201ENST00000580374 94 ntBASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MIR3180-3-201ENST00000584616 94 ntBASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 NPAP1P7-201ENST00000613027 823 ntBASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
ATG4BQ9Y4P1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AC233702.3-201ENST00000578656 1387 ntBASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 LINC00304-203ENST00000565008 1864 ntBASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms