Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 AC022211.2-201ENST00000585075 2527 ntBASIC20.92■□□□□ 0.94
LIMCH1Q9UPQ0 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 RNF152P1-201ENST00000397754 604 ntBASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 AC005104.2-201ENST00000427818 678 ntBASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 MTCL1P1-201ENST00000446207 792 ntBASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 GPR32P1-201ENST00000601788 811 ntBASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMCH1Q9UPQ0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 HOMER2P1-201ENST00000455653 964 ntBASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMCH1Q9UPQ0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
LIMCH1Q9UPQ0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMCH1Q9UPQ0 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 HYMAI.1-201ENST00000620949 238 ntBASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 AD000864.1-201ENST00000624076 2295 ntBASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMCH1Q9UPQ0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMCH1Q9UPQ0 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms