Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RBM17P3-201ENST00000417687 1192 ntBASIC17.86■□□□□ 0.45
LHX3Q9UBR4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 AC008608.2-201ENST00000606089 416 ntBASIC17.86■□□□□ 0.45
LHX3Q9UBR4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 PMPCAP1-201ENST00000508114 1576 ntBASIC17.86■□□□□ 0.45
LHX3Q9UBR4 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.86■□□□□ 0.45
LHX3Q9UBR4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 FAAHP1-202ENST00000446499 1238 ntBASIC17.85■□□□□ 0.45
LHX3Q9UBR4 FGFR3P6-201ENST00000457012 610 ntBASIC17.85■□□□□ 0.45
LHX3Q9UBR4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AC002558.1-201ENST00000488906 803 ntBASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AL031008.1-201ENST00000619963 541 ntBASIC17.85■□□□□ 0.45
LHX3Q9UBR4 AL355877.3-201ENST00000622820 899 ntBASIC17.85■□□□□ 0.45
LHX3Q9UBR4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LHX3Q9UBR4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 TPM4P1-201ENST00000436100 807 ntBASIC17.84■□□□□ 0.45
LHX3Q9UBR4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 MTDHP3-201ENST00000594186 672 ntBASIC17.84■□□□□ 0.45
LHX3Q9UBR4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 TP73-AS1-207ENST00000624167 988 ntBASIC17.84■□□□□ 0.45
LHX3Q9UBR4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 AC068880.1-201ENST00000507289 2297 ntBASIC17.84■□□□□ 0.45
LHX3Q9UBR4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.84■□□□□ 0.45
LHX3Q9UBR4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 AC134043.2-201ENST00000624206 2238 ntBASIC17.83■□□□□ 0.45
LHX3Q9UBR4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
LHX3Q9UBR4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX3Q9UBR4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LHX3Q9UBR4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms