Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CNTN3Q9P232 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CNTN3Q9P232 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CNTN3Q9P232 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
CNTN3Q9P232 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CNTN3Q9P232 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CNTN3Q9P232 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CNTN3Q9P232 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CNTN3Q9P232 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CNTN3Q9P232 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 AC021087.4-201ENST00000563761 564 ntBASIC19.08■□□□□ 0.64
CNTN3Q9P232 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CNTN3Q9P232 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.08■□□□□ 0.64
CNTN3Q9P232 NOC2LP2-201ENST00000407594 1944 ntBASIC19.08■□□□□ 0.64
CNTN3Q9P232 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AP001005.1-201ENST00000571755 1248 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 NKAPP1-205ENST00000585790 367 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AC073592.5-201ENST00000624854 528 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CNTN3Q9P232 SIGLEC16-201ENST00000599858 1437 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.07■□□□□ 0.64
CNTN3Q9P232 AC018470.1-201ENST00000624790 3129 ntBASIC19.07■□□□□ 0.64
CNTN3Q9P232 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SPDYE21P-201ENST00000413323 827 ntBASIC19.06■□□□□ 0.64
CNTN3Q9P232 AL031284.1-201ENST00000419297 478 ntBASIC19.06■□□□□ 0.64
CNTN3Q9P232 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 AC025062.2-201ENST00000605477 670 ntBASIC19.06■□□□□ 0.64
CNTN3Q9P232 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CNTN3Q9P232 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
CNTN3Q9P232 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CNTN3Q9P232 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.05■□□□□ 0.64
CNTN3Q9P232 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CNTN3Q9P232 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CNTN3Q9P232 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.05■□□□□ 0.64
CNTN3Q9P232 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CNTN3Q9P232 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms