Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NTF6B-201ENST00000591913 560 ntBASIC19.03■□□□□ 0.64
SIX2Q9NPC8 AL121956.5-201ENST00000625261 221 ntBASIC19.03■□□□□ 0.64
SIX2Q9NPC8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX2Q9NPC8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AC091607.1-201ENST00000490318 1060 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 KRT8P26-201ENST00000534154 1276 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AL138831.2-201ENST00000606564 490 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AC019129.2-201ENST00000609837 1235 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 PCDHA12-202ENST00000613593 2588 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
SIX2Q9NPC8 AC106820.2-201ENST00000563775 3264 ntBASIC19.02■□□□□ 0.64
SIX2Q9NPC8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SIX2Q9NPC8 AC022211.2-201ENST00000585075 2527 ntBASIC19.02■□□□□ 0.63
SIX2Q9NPC8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.02■□□□□ 0.63
SIX2Q9NPC8 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SIX2Q9NPC8 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SIX2Q9NPC8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19■□□□□ 0.63
SIX2Q9NPC8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 FAM210CP-201ENST00000445714 574 ntBASIC19■□□□□ 0.63
SIX2Q9NPC8 AC002558.1-201ENST00000488906 803 ntBASIC19■□□□□ 0.63
SIX2Q9NPC8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19■□□□□ 0.63
SIX2Q9NPC8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 AL049597.2-201ENST00000565575 961 ntBASIC19■□□□□ 0.63
SIX2Q9NPC8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SIX2Q9NPC8 AC090616.6-201ENST00000582640 721 ntBASIC19■□□□□ 0.63
SIX2Q9NPC8 AL139327.4-201ENST00000612362 153 ntBASIC19■□□□□ 0.63
SIX2Q9NPC8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SIX2Q9NPC8 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19■□□□□ 0.63
SIX2Q9NPC8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19■□□□□ 0.63
SIX2Q9NPC8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms