Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 AC091304.2-201ENST00000564639 760 ntBASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 AL450487.1-201ENST00000426799 995 ntBASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 KRT18P31-201ENST00000506277 1292 ntBASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 AC096582.2-201ENST00000510860 516 ntBASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRIM39Q9HCM9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 AC100803.2-201ENST00000562459 1963 ntBASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 NUS1P2-201ENST00000417358 873 ntBASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 MIR5100-201ENST00000579544 119 ntBASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 AC011467.2-201ENST00000598425 242 ntBASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 AC114341.1-201ENST00000618070 349 ntBASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
TRIM39Q9HCM9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 AL133373.2-201ENST00000623187 2828 ntBASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM39Q9HCM9 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms