Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 KRT18P38-201ENST00000449496 1282 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 AC008040.2-201ENST00000461049 708 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 AL441883.1-201ENST00000566170 1045 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 AC140113.3-201ENST00000605663 199 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 KRT8P45-201ENST00000414328 1447 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 KRT8P10-201ENST00000450021 1447 ntBASIC17.79■□□□□ 0.44
TRIM4Q9C037 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM4Q9C037 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM4Q9C037 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 MFAP1P1-201ENST00000442257 1255 ntBASIC17.78■□□□□ 0.44
TRIM4Q9C037 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 RCC2P6-201ENST00000526625 1557 ntBASIC17.78■□□□□ 0.44
TRIM4Q9C037 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM4Q9C037 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM4Q9C037 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 AC004870.1-201ENST00000315132 882 ntBASIC17.77■□□□□ 0.44
TRIM4Q9C037 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.77■□□□□ 0.44
TRIM4Q9C037 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 AL022342.1-201ENST00000400363 863 ntBASIC17.77■□□□□ 0.44
TRIM4Q9C037 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 AC007663.1-201ENST00000438948 1240 ntBASIC17.77■□□□□ 0.44
TRIM4Q9C037 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM4Q9C037 AC092119.3-201ENST00000612618 583 ntBASIC17.77■□□□□ 0.44
TRIM4Q9C037 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM4Q9C037 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM4Q9C037 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
TRIM4Q9C037 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM4Q9C037 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms