Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.31■□□□□ 0.84
USP28Q96RU2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP28Q96RU2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP28Q96RU2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.3■□□□□ 0.84
USP28Q96RU2 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.3■□□□□ 0.84
USP28Q96RU2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.3■□□□□ 0.84
USP28Q96RU2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.3■□□□□ 0.84
USP28Q96RU2 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
USP28Q96RU2 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 ZNF444P1-201ENST00000559497 298 ntBASIC20.3■□□□□ 0.84
USP28Q96RU2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.3■□□□□ 0.84
USP28Q96RU2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.3■□□□□ 0.84
USP28Q96RU2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP28Q96RU2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 RNF152P1-201ENST00000397754 604 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 SPDYE13P-201ENST00000445314 798 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 MTCL1P1-201ENST00000446207 792 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 AC112907.2-201ENST00000448639 330 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.29■□□□□ 0.84
USP28Q96RU2 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.29■□□□□ 0.84
USP28Q96RU2 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.29■□□□□ 0.84
USP28Q96RU2 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.29■□□□□ 0.84
USP28Q96RU2 RNF126P1-202ENST00000569893 925 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.29■□□□□ 0.84
USP28Q96RU2 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.29■□□□□ 0.84
USP28Q96RU2 GPR32P1-201ENST00000601788 811 ntBASIC20.29■□□□□ 0.84
USP28Q96RU2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.29■□□□□ 0.84
USP28Q96RU2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP28Q96RU2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
USP28Q96RU2 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
USP28Q96RU2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 LYSMD4-203ENST00000378904 2122 ntBASIC20.28■□□□□ 0.84
USP28Q96RU2 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 AC211429.1-201ENST00000415277 523 ntBASIC20.28■□□□□ 0.84
USP28Q96RU2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.28■□□□□ 0.84
USP28Q96RU2 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.28■□□□□ 0.84
USP28Q96RU2 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
USP28Q96RU2 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.28■□□□□ 0.84
USP28Q96RU2 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.28■□□□□ 0.84
USP28Q96RU2 AC005332.3-201ENST00000589904 676 ntBASIC20.28■□□□□ 0.84
USP28Q96RU2 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.28■□□□□ 0.84
USP28Q96RU2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP28Q96RU2 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.28■□□□□ 0.84
USP28Q96RU2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 BX276092.7-203ENST00000637198 1536 ntBASIC20.27■□□□□ 0.84
USP28Q96RU2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP28Q96RU2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
USP28Q96RU2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USP28Q96RU2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms