Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 DRAXINP1-201ENST00000437611 948 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TPSP2-201ENST00000561760 610 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AP005901.3-202ENST00000581653 237 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AP002414.4-201ENST00000589764 1148 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AL138831.2-201ENST00000606564 490 ntBASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.74□□□□□ -0.21
CCDC140Q96MF4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC125634.1-201ENST00000438758 1403 ntBASIC13.73□□□□□ -0.21
CCDC140Q96MF4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC007967.3-201ENST00000434308 558 ntBASIC13.73□□□□□ -0.21
CCDC140Q96MF4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 VENTXP7-201ENST00000475503 772 ntBASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.73□□□□□ -0.21
CCDC140Q96MF4 LINC01451-201ENST00000623792 534 ntBASIC13.73□□□□□ -0.21
CCDC140Q96MF4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC140Q96MF4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 AC233702.3-201ENST00000578656 1387 ntBASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 TOB2P1-201ENST00000469761 992 ntBASIC13.72□□□□□ -0.21
CCDC140Q96MF4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms