Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VMP1Q96GC9 AL645608.8-201ENST00000606034 2086 ntBASIC17.05■□□□□ 0.32
VMP1Q96GC9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VMP1Q96GC9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 SLC25A6P5-201ENST00000435663 894 ntBASIC17.04■□□□□ 0.32
VMP1Q96GC9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 AC008687.5-201ENST00000593746 558 ntBASIC17.04■□□□□ 0.32
VMP1Q96GC9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.04■□□□□ 0.32
VMP1Q96GC9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.04■□□□□ 0.32
VMP1Q96GC9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VMP1Q96GC9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VMP1Q96GC9 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.03■□□□□ 0.32
VMP1Q96GC9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.02■□□□□ 0.32
VMP1Q96GC9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VMP1Q96GC9 KRT89P-201ENST00000620027 1478 ntBASIC17.02■□□□□ 0.32
VMP1Q96GC9 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms