Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 AC109462.3-201ENST00000573934 613 ntBASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 AC099336.1-202ENST00000602961 463 ntBASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 AL732292.2-201ENST00000609649 430 ntBASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.08■□□□□ 0.49
SHROOM3Q8TF72 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 AC096582.2-201ENST00000510860 516 ntBASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 AC138894.3-201ENST00000603787 634 ntBASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 AL031008.1-201ENST00000619963 541 ntBASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SHROOM3Q8TF72 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 AC139713.2-201ENST00000641328 2723 ntBASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.07■□□□□ 0.48
SHROOM3Q8TF72 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 SLC25A6P4-201ENST00000586535 553 ntBASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 LYSMD4-203ENST00000378904 2122 ntBASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC133963.1-201ENST00000504166 1679 ntBASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC005104.2-201ENST00000427818 678 ntBASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 HMGN1P19-201ENST00000436976 333 ntBASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.06■□□□□ 0.48
SHROOM3Q8TF72 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHROOM3Q8TF72 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHROOM3Q8TF72 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.05■□□□□ 0.48
SHROOM3Q8TF72 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.05■□□□□ 0.48
SHROOM3Q8TF72 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHROOM3Q8TF72 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms