Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CROCCP2-202ENST00000412962 2773 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC104819.1-201ENST00000504587 486 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PENK-208ENST00000523051 772 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 IGHGP-201ENST00000390555 1178 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 KRT18P41-201ENST00000518924 1277 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC034105.1-201ENST00000563488 319 ntBASIC5.5□□□□□ -1.53
SYNE1Q8NF91 PAM16-208ENST00000573553 722 ntTSL 2 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SYNE1Q8NF91 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 EML3-212ENST00000494176 2901 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 EML3-216ENST00000529309 2909 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ABR-217ENST00000572441 563 ntTSL 4 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PIN1-206ENST00000587625 878 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC004817.3-201ENST00000602957 2129 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 LINC02199-201ENST00000506655 2702 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 AC125634.1-201ENST00000438758 1403 ntBASIC5.49□□□□□ -1.53
SYNE1Q8NF91 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PRKN-208ENST00000610470 531 ntTSL 2 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 PRKN-209ENST00000612485 225 ntTSL 5 BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SYNE1Q8NF91 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms