Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN3Q8NCR9 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AL137784.3-201ENST00000623858 2288 ntBASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 IRS3P-201ENST00000223076 1006 ntBASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 AC068587.9-201ENST00000641814 219 ntBASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 RCC2P6-201ENST00000526625 1557 ntBASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN3Q8NCR9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN3Q8NCR9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 AC060834.1-201ENST00000443027 2032 ntBASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 PHGDH-209ENST00000641074 1780 ntBASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 AC079140.4-201ENST00000507448 529 ntBASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN3Q8NCR9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms