Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC004967.1-201ENST00000453589 447 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC21.75■■□□□ 1.07
USP48Q86UV5 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 Z83851.2-201ENST00000609564 659 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 AC134684.3-201ENST00000641758 218 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 AC068587.9-201ENST00000641814 219 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 AC079781.4-201ENST00000641908 219 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 HLA-J-201ENST00000462773 1622 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.75■■□□□ 1.07
USP48Q86UV5 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 AL499627.1-201ENST00000569373 2188 ntBASIC21.75■■□□□ 1.07
USP48Q86UV5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.75■■□□□ 1.07
USP48Q86UV5 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
USP48Q86UV5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP48Q86UV5 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
USP48Q86UV5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
USP48Q86UV5 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.74■■□□□ 1.07
USP48Q86UV5 KRT8P50-201ENST00000562022 1438 ntBASIC21.74■■□□□ 1.07
USP48Q86UV5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.74■■□□□ 1.07
USP48Q86UV5 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
USP48Q86UV5 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.74■■□□□ 1.07
USP48Q86UV5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.74■■□□□ 1.07
USP48Q86UV5 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.74■■□□□ 1.07
USP48Q86UV5 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 FZD10-202ENST00000539839 3282 ntBASIC21.74■■□□□ 1.07
USP48Q86UV5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.74■■□□□ 1.07
USP48Q86UV5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
USP48Q86UV5 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP48Q86UV5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
USP48Q86UV5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
USP48Q86UV5 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.73■■□□□ 1.07
USP48Q86UV5 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.73■■□□□ 1.07
USP48Q86UV5 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.73■■□□□ 1.07
USP48Q86UV5 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
USP48Q86UV5 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
USP48Q86UV5 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.73■■□□□ 1.07
USP48Q86UV5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC21.73■■□□□ 1.07
USP48Q86UV5 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
USP48Q86UV5 INTS4P1-201ENST00000438455 1935 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 AP005117.1-201ENST00000584346 1413 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
USP48Q86UV5 AC008764.6-201ENST00000595909 2069 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.72■■□□□ 1.07
USP48Q86UV5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 AC068472.1-201ENST00000474589 881 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
USP48Q86UV5 OR7E14P-202ENST00000530490 1290 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.72■■□□□ 1.07
USP48Q86UV5 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.72■■□□□ 1.07
USP48Q86UV5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.72■■□□□ 1.07
USP48Q86UV5 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.72■■□□□ 1.07
USP48Q86UV5 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.72■■□□□ 1.07
USP48Q86UV5 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
USP48Q86UV5 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP48Q86UV5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
USP48Q86UV5 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms