Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 AC012317.2-201ENST00000623305 2251 ntBASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 AC114341.1-201ENST00000618070 349 ntBASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SH3RF1Q7Z6J0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 FGFR3P6-201ENST00000457012 610 ntBASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SH3RF1Q7Z6J0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 AL355877.3-201ENST00000622820 899 ntBASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SH3RF1Q7Z6J0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms