Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 PCDHA12-202ENST00000613593 2588 ntBASIC18.51■□□□□ 0.55
RFWD3Q6PCD5 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.51■□□□□ 0.55
RFWD3Q6PCD5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RFWD3Q6PCD5 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.51■□□□□ 0.55
RFWD3Q6PCD5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
RFWD3Q6PCD5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 AC111152.3-201ENST00000569699 673 ntBASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 RN7SL510P-201ENST00000581311 263 ntBASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFWD3Q6PCD5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 LINC00896-202ENST00000609602 2128 ntBASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.49■□□□□ 0.55
RFWD3Q6PCD5 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AL138831.2-201ENST00000606564 490 ntBASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 AL691432.3-201ENST00000621860 400 ntBASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.48■□□□□ 0.55
RFWD3Q6PCD5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms