Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 LINC00602-201ENST00000629776 2065 ntBASIC18.04■□□□□ 0.48
USP39Q53GS9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 AL354751.1-201ENST00000412768 1863 ntBASIC18.04■□□□□ 0.48
USP39Q53GS9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 UPF3AP3-201ENST00000420996 769 ntBASIC18.04■□□□□ 0.48
USP39Q53GS9 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.04■□□□□ 0.48
USP39Q53GS9 AC098831.1-202ENST00000438821 336 ntBASIC18.04■□□□□ 0.48
USP39Q53GS9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.04■□□□□ 0.48
USP39Q53GS9 AL139288.1-201ENST00000623748 933 ntBASIC18.04■□□□□ 0.48
USP39Q53GS9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
USP39Q53GS9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.04■□□□□ 0.48
USP39Q53GS9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
USP39Q53GS9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
USP39Q53GS9 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP39Q53GS9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.04■□□□□ 0.48
USP39Q53GS9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
USP39Q53GS9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.03■□□□□ 0.48
USP39Q53GS9 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.03■□□□□ 0.48
USP39Q53GS9 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 KRT18P3-201ENST00000451602 1288 ntBASIC18.03■□□□□ 0.48
USP39Q53GS9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
USP39Q53GS9 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.03■□□□□ 0.48
USP39Q53GS9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 MIR3687-2-201ENST00000577708 61 ntBASIC18.03■□□□□ 0.48
USP39Q53GS9 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
USP39Q53GS9 Z83851.2-201ENST00000609564 659 ntBASIC18.03■□□□□ 0.48
USP39Q53GS9 MIR3687-1-201ENST00000614492 61 ntBASIC18.03■□□□□ 0.48
USP39Q53GS9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.03■□□□□ 0.48
USP39Q53GS9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
USP39Q53GS9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.03■□□□□ 0.48
USP39Q53GS9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
USP39Q53GS9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AC073592.3-201ENST00000625118 1834 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AC099343.3-201ENST00000605834 2503 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.02■□□□□ 0.48
USP39Q53GS9 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 KRT18P65-201ENST00000439811 1286 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.02■□□□□ 0.48
USP39Q53GS9 RNA5SP415-201ENST00000517246 115 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AC034105.1-201ENST00000563488 319 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AC008735.5-201ENST00000623544 497 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.02■□□□□ 0.48
USP39Q53GS9 AC079781.4-201ENST00000641908 219 ntBASIC18.02■□□□□ 0.48
USP39Q53GS9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
USP39Q53GS9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.02■□□□□ 0.47
USP39Q53GS9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
USP39Q53GS9 AC126763.1-201ENST00000552015 2118 ntBASIC18.02■□□□□ 0.47
USP39Q53GS9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms