Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.22■■□□□ 1.31
COL18A1P39060 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.22■■□□□ 1.31
COL18A1P39060 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL18A1P39060 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC23.22■■□□□ 1.31
COL18A1P39060 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
COL18A1P39060 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.22■■□□□ 1.31
COL18A1P39060 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC23.22■■□□□ 1.31
COL18A1P39060 GREM1-201ENST00000560677 623 ntTSL 4 BASIC23.22■■□□□ 1.31
COL18A1P39060 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC23.22■■□□□ 1.31
COL18A1P39060 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
COL18A1P39060 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
COL18A1P39060 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC23.21■■□□□ 1.31
COL18A1P39060 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC23.21■■□□□ 1.31
COL18A1P39060 AC015911.4-201ENST00000588022 1070 ntBASIC23.21■■□□□ 1.31
COL18A1P39060 AC004835.2-201ENST00000603762 682 ntBASIC23.21■■□□□ 1.31
COL18A1P39060 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC23.21■■□□□ 1.31
COL18A1P39060 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
COL18A1P39060 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
COL18A1P39060 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL18A1P39060 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.2■■□□□ 1.3
COL18A1P39060 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC23.2■■□□□ 1.3
COL18A1P39060 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.2■■□□□ 1.3
COL18A1P39060 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL18A1P39060 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC23.2■■□□□ 1.3
COL18A1P39060 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL18A1P39060 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.2■■□□□ 1.3
COL18A1P39060 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.2■■□□□ 1.3
COL18A1P39060 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL18A1P39060 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL18A1P39060 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL18A1P39060 NEK7-201ENST00000367383 586 ntTSL 2 BASIC23.19■■□□□ 1.3
COL18A1P39060 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC23.19■■□□□ 1.3
COL18A1P39060 AC107918.2-201ENST00000530817 355 ntBASIC23.19■■□□□ 1.3
COL18A1P39060 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC23.19■■□□□ 1.3
COL18A1P39060 AJ011932.1-201ENST00000621707 465 ntBASIC23.19■■□□□ 1.3
COL18A1P39060 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL18A1P39060 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.19■■□□□ 1.3
COL18A1P39060 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC23.19■■□□□ 1.3
COL18A1P39060 AL513480.1-201ENST00000451731 511 ntBASIC23.19■■□□□ 1.3
COL18A1P39060 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
COL18A1P39060 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.18■■□□□ 1.3
COL18A1P39060 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.18■■□□□ 1.3
COL18A1P39060 ENSA-206ENST00000361631 725 ntTSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 KRT8P48-201ENST00000515599 1220 ntBASIC23.18■■□□□ 1.3
COL18A1P39060 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 Z92544.3-201ENST00000624747 417 ntBASIC23.18■■□□□ 1.3
COL18A1P39060 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.18■■□□□ 1.3
COL18A1P39060 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.18■■□□□ 1.3
COL18A1P39060 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL18A1P39060 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.17■■□□□ 1.3
COL18A1P39060 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC23.17■■□□□ 1.3
COL18A1P39060 AL355306.1-201ENST00000415580 579 ntBASIC23.17■■□□□ 1.3
COL18A1P39060 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL18A1P39060 LINC00628-201ENST00000628516 1289 ntBASIC23.17■■□□□ 1.3
COL18A1P39060 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
COL18A1P39060 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.17■■□□□ 1.3
COL18A1P39060 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 FLYWCH1P1-201ENST00000460917 1874 ntBASIC23.17■■□□□ 1.3
COL18A1P39060 MYCLP1-201ENST00000372451 1075 ntBASIC23.17■■□□□ 1.3
COL18A1P39060 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
COL18A1P39060 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC23.17■■□□□ 1.3
COL18A1P39060 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC23.17■■□□□ 1.3
COL18A1P39060 THTPA-204ENST00000554970 569 ntTSL 4 BASIC23.17■■□□□ 1.3
COL18A1P39060 THTPA-206ENST00000556015 535 ntTSL 3 BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms