Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.13■□□□□ 0.97
COL4A5P29400 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.13■□□□□ 0.97
COL4A5P29400 TIMM8BP1-201ENST00000452384 211 ntBASIC21.13■□□□□ 0.97
COL4A5P29400 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A5P29400 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A5P29400 AC025678.2-201ENST00000562061 970 ntBASIC21.13■□□□□ 0.97
COL4A5P29400 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A5P29400 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A5P29400 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A5P29400 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A5P29400 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A5P29400 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A5P29400 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.12■□□□□ 0.97
COL4A5P29400 AC015922.1-201ENST00000421102 1152 ntBASIC21.12■□□□□ 0.97
COL4A5P29400 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A5P29400 AC051619.7-201ENST00000568314 623 ntBASIC21.12■□□□□ 0.97
COL4A5P29400 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
COL4A5P29400 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 GPS2P2-201ENST00000430745 888 ntBASIC21.12■□□□□ 0.97
COL4A5P29400 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.12■□□□□ 0.97
COL4A5P29400 SLC25A6P2-201ENST00000497974 877 ntBASIC21.12■□□□□ 0.97
COL4A5P29400 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A5P29400 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL4A5P29400 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COL4A5P29400 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC21.12■□□□□ 0.97
COL4A5P29400 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL4A5P29400 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
COL4A5P29400 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL4A5P29400 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.11■□□□□ 0.97
COL4A5P29400 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 AC236430.1-201ENST00000402231 743 ntBASIC21.11■□□□□ 0.97
COL4A5P29400 ACTG1P4-201ENST00000425123 1122 ntBASIC21.11■□□□□ 0.97
COL4A5P29400 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.11■□□□□ 0.97
COL4A5P29400 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.11■□□□□ 0.97
COL4A5P29400 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.11■□□□□ 0.97
COL4A5P29400 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
COL4A5P29400 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.11■□□□□ 0.97
COL4A5P29400 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
COL4A5P29400 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL4A5P29400 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 PI4KAP1-204ENST00000612579 1703 ntBASIC21.1■□□□□ 0.97
COL4A5P29400 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.1■□□□□ 0.97
COL4A5P29400 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
COL4A5P29400 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.1■□□□□ 0.97
COL4A5P29400 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL4A5P29400 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.1■□□□□ 0.97
COL4A5P29400 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.1■□□□□ 0.97
COL4A5P29400 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.1■□□□□ 0.97
COL4A5P29400 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.1■□□□□ 0.97
COL4A5P29400 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC21.1■□□□□ 0.97
COL4A5P29400 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
COL4A5P29400 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL4A5P29400 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms