Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SDC1P18827 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 TSPY5P-201ENST00000426936 936 ntBASIC16.92■□□□□ 0.3
SDC1P18827 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC1P18827 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.92■□□□□ 0.3
SDC1P18827 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 AL359075.1-203ENST00000462729 1002 ntBASIC16.92■□□□□ 0.3
SDC1P18827 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 VENTXP5-201ENST00000523979 775 ntBASIC16.92■□□□□ 0.3
SDC1P18827 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.92■□□□□ 0.3
SDC1P18827 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 GPR32P1-201ENST00000601788 811 ntBASIC16.92■□□□□ 0.3
SDC1P18827 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.92■□□□□ 0.3
SDC1P18827 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SDC1P18827 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SDC1P18827 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC1P18827 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SDC1P18827 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 BX276092.7-203ENST00000637198 1536 ntBASIC16.91■□□□□ 0.3
SDC1P18827 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
SDC1P18827 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SDC1P18827 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 RNF152P1-201ENST00000397754 604 ntBASIC16.91■□□□□ 0.3
SDC1P18827 HOMER2P1-201ENST00000455653 964 ntBASIC16.91■□□□□ 0.3
SDC1P18827 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SDC1P18827 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.91■□□□□ 0.3
SDC1P18827 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 HYMAI.1-201ENST00000620949 238 ntBASIC16.91■□□□□ 0.3
SDC1P18827 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SDC1P18827 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC1P18827 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SDC1P18827 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SDC1P18827 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SDC1P18827 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SDC1P18827 AC022211.2-201ENST00000585075 2527 ntBASIC16.9■□□□□ 0.3
SDC1P18827 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SDC1P18827 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 MTCL1P1-201ENST00000446207 792 ntBASIC16.9■□□□□ 0.3
SDC1P18827 AC112907.2-201ENST00000448639 330 ntBASIC16.9■□□□□ 0.3
SDC1P18827 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.9■□□□□ 0.3
SDC1P18827 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.9■□□□□ 0.3
SDC1P18827 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SDC1P18827 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SDC1P18827 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.9■□□□□ 0.3
SDC1P18827 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.9■□□□□ 0.3
SDC1P18827 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.9■□□□□ 0.3
SDC1P18827 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SDC1P18827 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms