Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TPM1P09493 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TPM1P09493 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
TPM1P09493 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
TPM1P09493 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TPM1P09493 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 AL355355.2-201ENST00000442321 338 ntBASIC19.59■□□□□ 0.73
TPM1P09493 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.59■□□□□ 0.73
TPM1P09493 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 AL353719.1-201ENST00000566847 864 ntBASIC19.59■□□□□ 0.73
TPM1P09493 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.59■□□□□ 0.73
TPM1P09493 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.59■□□□□ 0.73
TPM1P09493 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.59■□□□□ 0.73
TPM1P09493 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TPM1P09493 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TPM1P09493 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TPM1P09493 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
TPM1P09493 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
TPM1P09493 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TPM1P09493 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
TPM1P09493 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.58■□□□□ 0.73
TPM1P09493 AC018695.7-201ENST00000624587 2492 ntBASIC19.58■□□□□ 0.73
TPM1P09493 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TPM1P09493 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TPM1P09493 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TPM1P09493 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.58■□□□□ 0.72
TPM1P09493 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.58■□□□□ 0.72
TPM1P09493 CCR12P-201ENST00000446203 998 ntBASIC19.58■□□□□ 0.72
TPM1P09493 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.58■□□□□ 0.72
TPM1P09493 REXO1L10P-201ENST00000615707 1290 ntBASIC19.58■□□□□ 0.72
TPM1P09493 REXO1L12P-201ENST00000622156 912 ntBASIC19.58■□□□□ 0.72
TPM1P09493 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TPM1P09493 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.58■□□□□ 0.72
TPM1P09493 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 CROCCP2-202ENST00000412962 2773 ntBASIC19.58■□□□□ 0.72
TPM1P09493 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
TPM1P09493 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TPM1P09493 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.58■□□□□ 0.72
TPM1P09493 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.57■□□□□ 0.72
TPM1P09493 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.57■□□□□ 0.72
TPM1P09493 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.57■□□□□ 0.72
TPM1P09493 AC100803.2-201ENST00000562459 1963 ntBASIC19.57■□□□□ 0.72
TPM1P09493 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
TPM1P09493 AC046158.3-201ENST00000624947 2558 ntBASIC19.57■□□□□ 0.72
TPM1P09493 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.57■□□□□ 0.72
TPM1P09493 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TPM1P09493 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TPM1P09493 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms