Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL2A1P02458 PMS2P2-201ENST00000425039 1128 ntBASIC20.58■□□□□ 0.89
COL2A1P02458 DNAJB3-202ENST00000449667 1266 ntBASIC20.58■□□□□ 0.89
COL2A1P02458 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.58■□□□□ 0.89
COL2A1P02458 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.58■□□□□ 0.89
COL2A1P02458 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
COL2A1P02458 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL2A1P02458 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL2A1P02458 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL2A1P02458 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.58■□□□□ 0.88
COL2A1P02458 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL2A1P02458 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL2A1P02458 AC138028.4-201ENST00000564984 1845 ntBASIC20.57■□□□□ 0.88
COL2A1P02458 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.57■□□□□ 0.88
COL2A1P02458 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL2A1P02458 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
COL2A1P02458 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.57■□□□□ 0.88
COL2A1P02458 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 C20orf181-201ENST00000623918 480 ntBASIC20.57■□□□□ 0.88
COL2A1P02458 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COL2A1P02458 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.57■□□□□ 0.88
COL2A1P02458 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
COL2A1P02458 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL2A1P02458 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.56■□□□□ 0.88
COL2A1P02458 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.56■□□□□ 0.88
COL2A1P02458 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.56■□□□□ 0.88
COL2A1P02458 AC096734.2-201ENST00000562054 433 ntBASIC20.56■□□□□ 0.88
COL2A1P02458 AC079781.4-201ENST00000641908 219 ntBASIC20.56■□□□□ 0.88
COL2A1P02458 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.56■□□□□ 0.88
COL2A1P02458 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.56■□□□□ 0.88
COL2A1P02458 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.56■□□□□ 0.88
COL2A1P02458 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 AC211486.1-202ENST00000416371 468 ntBASIC20.56■□□□□ 0.88
COL2A1P02458 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.56■□□□□ 0.88
COL2A1P02458 AC211476.1-201ENST00000503899 468 ntBASIC20.56■□□□□ 0.88
COL2A1P02458 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.56■□□□□ 0.88
COL2A1P02458 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.56■□□□□ 0.88
COL2A1P02458 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.56■□□□□ 0.88
COL2A1P02458 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL2A1P02458 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL2A1P02458 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.56■□□□□ 0.88
COL2A1P02458 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL2A1P02458 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.55■□□□□ 0.88
COL2A1P02458 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.55■□□□□ 0.88
COL2A1P02458 AC046185.3-201ENST00000623228 1824 ntBASIC20.55■□□□□ 0.88
COL2A1P02458 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
COL2A1P02458 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.55■□□□□ 0.88
COL2A1P02458 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL2A1P02458 AC005829.1-201ENST00000570002 483 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms