Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 MTDHP3-201ENST00000594186 672 ntBASIC19.92■□□□□ 0.78
MSH4O15457 AL121912.1-201ENST00000603683 238 ntBASIC19.92■□□□□ 0.78
MSH4O15457 AC008608.2-201ENST00000606089 416 ntBASIC19.92■□□□□ 0.78
MSH4O15457 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH4O15457 AL353593.2-201ENST00000602529 1483 ntBASIC19.92■□□□□ 0.78
MSH4O15457 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH4O15457 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH4O15457 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
MSH4O15457 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH4O15457 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH4O15457 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH4O15457 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH4O15457 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
MSH4O15457 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSH4O15457 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSH4O15457 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSH4O15457 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 AC005104.2-201ENST00000427818 678 ntBASIC19.9■□□□□ 0.78
MSH4O15457 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH4O15457 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH4O15457 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.9■□□□□ 0.78
MSH4O15457 AC109462.3-201ENST00000573934 613 ntBASIC19.9■□□□□ 0.78
MSH4O15457 TP73-AS1-207ENST00000624167 988 ntBASIC19.9■□□□□ 0.78
MSH4O15457 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH4O15457 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH4O15457 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
MSH4O15457 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
MSH4O15457 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH4O15457 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
MSH4O15457 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH4O15457 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH4O15457 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH4O15457 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH4O15457 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 NOC2LP2-201ENST00000407594 1944 ntBASIC19.88■□□□□ 0.77
MSH4O15457 AC132938.5-201ENST00000624980 1813 ntBASIC19.88■□□□□ 0.77
MSH4O15457 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.88■□□□□ 0.77
MSH4O15457 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.88■□□□□ 0.77
MSH4O15457 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH4O15457 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.88■□□□□ 0.77
MSH4O15457 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
MSH4O15457 AP002469.2-201ENST00000531724 424 ntBASIC19.88■□□□□ 0.77
MSH4O15457 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
MSH4O15457 AL160237.2-201ENST00000556165 472 ntBASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms